Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs34590339 chr6:161806055 G/A 1.9E-7 369 22.4 17.7 8.73 KM Plot
CRC rs34688882 chr7:62102900 T/C 5.74E-6 369 24.33 20.23 14.37 KM Plot
CRC rs34713577 chr7:61987735 C/A 6.37E-7 366 22.75 20.3 11.27 KM Plot
CRC rs34731287 chr12:117880958 C/A 9.78E-6 371 21.67 25.13 16.03 KM Plot
CRC rs34733751 chr7:62122172 G/A 1.01E-6 368 24.2 20.08 11.27 KM Plot
CRC rs34746499 chr7:61058494 C/T 4.01E-11 367 24.15 20.23 9.72 KM Plot
CRC rs34776357 chr7:61067840 G/A 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs34830860 chr7:62106002 C/T 5.44E-6 366 24.33 20.05 14.37 KM Plot
CRC rs34922205 chr7:62093673 T/C 3.59E-5 369 24.47 19.87 17.47 KM Plot
CRC rs34953456 chr7:62105300 C/T 5.44E-6 366 24.33 20.05 14.37 KM Plot
CRC rs35012496 chr7:62063297 G/A 8.24E-7 366 23.83 20.05 11.27 KM Plot
CRC rs35029027 chr3:38680973 C/T 1.07E-5 370 22.13 27.1 15.03 KM Plot
CRC rs35062482 chr7:62102529 G/A 5.74E-6 369 24.33 20.23 14.37 KM Plot
CRC rs35085775 chr7:61060381 G/A 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs35091692 chr7:57828888 T/C 1.07E-5 372 23.37 20.3 11.92 KM Plot